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ASM468434v1

Organism name:
Citrobacter tructae (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SNU WT2
BioSample:
SAMN11282944
BioProject:
PRJNA529751
Submitter:
Seoul National University
Date:
2019/04/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004684345.1 (latest)
RefSeq assembly accession:
GCF_004684345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
81.2x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 2514761 [UID] 9166888 [GenBank] 9232538 [RefSeq]

See Genome Information for Citrobacter tructae

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/02/2021 18:01:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,666
CDSs (total)::4,550
Genes (coding)::4,483
CDSs (with protein)::4,483
Genes (RNA)::116
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::7
Pseudo Genes (total)::67
CDSs (without protein)::67
Pseudo Genes (ambiguous residues)::0 of 67
Pseudo Genes (frameshifted)::27 of 67
Pseudo Genes (incomplete)::40 of 67
Pseudo Genes (internal stop)::17 of 67
Pseudo Genes (multiple problems)::15 of 67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,946,572
Total ungapped length4,946,572
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004684355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP038469.1=NZ_CP038469.1
Plasmid unnamed1CP038468.1=NZ_CP038468.1

Assembly statistics

MoleculeTotal
Length
All4,946,572
Chromosome 4,840,504
Plasmid unnamed1106,068

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter tructaeCitrobacter tructae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002042885.1Citrobacter portucalensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.8479.0779.55

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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