U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM456437v1

Organism name:
Nocardioides euryhalodurans (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MMS17-SY117
BioSample:
SAMN10923273
BioProject:
PRJNA521813
Submitter:
Chungnam National University
Date:
2019/04/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004564375.1 (latest)
RefSeq assembly accession:
GCF_004564375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
yes
Genome coverage:
220.0x
Sequencing technology:
PacBio RSII

IDs: 2455601 [UID] 9030268 [GenBank] 9092938 [RefSeq]

See Genome Information for Nocardioides euryhalodurans

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_004564375.1-RS_2024_04_22
Annotation Date::04/22/2024 03:27:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,969
CDSs (total)::3,913
Genes (coding)::3,901
CDSs (with protein)::3,901
Genes (RNA)::56
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::12
CDSs (without protein)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::6 of 12
Pseudo Genes (incomplete)::7 of 12
Pseudo Genes (internal stop)::0 of 12
Pseudo Genes (multiple problems)::1 of 12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,017,744
Total ungapped length4,017,744
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004564385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP038267.1=NZ_CP038267.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,017,744

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nocardioides euryhaloduransNocardioides euryhalodurans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013409645.1Nocardioides panaciterrulaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.1221.7320.44

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected