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ASM435941v1

Organism name:
Aliivibrio fischeri (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FQ-A001
BioSample:
SAMN11031202
BioProject:
PRJNA524701
Submitter:
University of Wisconsin-Madison
Date:
2019/03/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004359415.1 (latest)
RefSeq assembly accession:
GCF_004359415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SJSX01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
470.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 2350701 [UID] 8765598 [GenBank] 8775648 [RefSeq]

See Genome Information for Aliivibrio fischeri

There are 83 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Tim Miyashiro, The Pennsylvania State University
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/04/2019 12:54:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,015
CDSs (total)::3,882
Genes (coding)::3,838
CDSs (with protein)::3,838
Genes (RNA)::133
rRNAs::6, 5, 4 (5S, 16S, 23S)
complete rRNAs::6, 3, 3 (5S, 16S, 23S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::114
ncRNAs::4
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::25 of 44
Pseudo Genes (incomplete)::16 of 44
Pseudo Genes (internal stop)::10 of 44
Pseudo Genes (multiple problems)::7 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,286,900
Total ungapped length4,286,900
Number of contigs4
Contig N502,417,280
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,286,90044,286,9002,417,28000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aliivibrio fischeriAliivibrio fischeri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_023983475.1Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023983475.1Aliivibrio fischeritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.4286.4382.28
Best-match type95.4286.4382.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna