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ASM435280v1

Organism name:
Nonomuraea mesophila (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 6K102
BioSample:
SAMN11032555
BioProject:
PRJNA524765
Submitter:
Ondokuz Mayis University
Date:
2019/03/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004352805.1 (latest)
RefSeq assembly accession:
GCF_004352805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SMLD01
Assembly method:
SPAdes v. FEB-2019
Expected final version:
no
Genome coverage:
97x
Sequencing technology:
Illumina HiSeq

IDs: 2347321 [UID] 8745118 [GenBank] 8752838 [RefSeq]

See Genome Information for Nonomuraea mesophila

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/09/2019 02:36:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,682
CDSs (total)::9,605
Genes (coding)::9,217
CDSs (with protein)::9,217
Genes (RNA)::77
rRNAs::5, 4, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 3, 2 (5S, 16S, 23S)
tRNAs::62
ncRNAs::3
Pseudo Genes (total)::388
CDSs (without protein)::388
Pseudo Genes (ambiguous residues)::0 of 388
Pseudo Genes (frameshifted)::119 of 388
Pseudo Genes (incomplete)::304 of 388
Pseudo Genes (internal stop)::24 of 388
Pseudo Genes (multiple problems)::53 of 388
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,138,478
Total ungapped length10,138,478
Number of contigs427
Contig N5044,189
Contig L5066
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)427

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,138,47842710,138,47844,18900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nonomuraea mesophilaNonomuraea mesophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004348345.1Nonomuraea longisporatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.4077.1485.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected