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Source database (GenBank or RefSeq) File type

ASM433229v1

Organism name:: Alloscardovia theropitheci (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: GLDI4/2
BioSample:: SAMN10587597
BioProject:: PRJNA509746
Submitter:: University of Bologna
Date:: 2019/03/07
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_004332295.1 (latest)
RefSeq assembly accession:: GCF_004332295.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: RXLP01
Assembly method:: Platanus_B v. 1.1.0
Expected final version:: yes
Genome coverage:: 89.4x
Sequencing technology:: Illumina MiSeq

IDs: 2337961 [UID] 8715798 [GenBank] 8731588 [RefSeq]

See Genome Information for Alloscardovia theropitheci

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004332295.1	=	GCF_004332295.1	ASM433229v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from DSMZ
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/18/2018 00:11:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,656
CDSs (total)::1,600
Genes (coding)::1,579
CDSs (with protein)::1,579
Genes (RNA)::56
rRNAs::2, 3, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::21
CDSs (without protein)::21
Pseudo Genes (ambiguous residues)::2 of 21
Pseudo Genes (frameshifted)::10 of 21
Pseudo Genes (incomplete)::12 of 21
Pseudo Genes (internal stop)::3 of 21
Pseudo Genes (multiple problems)::5 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,959,824
Total ungapped length	1,959,574
Gaps between scaffolds	0
Number of scaffolds	27
Scaffold N50	146,227
Scaffold L50	5
Number of contigs	31
Contig N50	146,227
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	27

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	85.39	3.35	3.47

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ASM433229v1

See Genome Information for Alloscardovia theropitheci

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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