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ASM430282v1

Organism name:
Enterobacter cloacae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PLV-MS02
BioSample:
SAMN10411414
BioProject:
PRJNA505145
Submitter:
Banaras Hindu University
Date:
2019/02/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • fragmented assembly
GenBank assembly accession:
GCA_004302825.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
RQJF01
Assembly method:
Minia v. 2.0.3
Expected final version:
no
Genome coverage:
235.0x
Sequencing technology:
Illumina MiSeq

IDs: 2320381 [UID] 8650688 [GenBank]

See Genome Information for Enterobacter cloacae

There are 1014 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from submitted to MTCC
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/23/2018 12:29:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,245
CDSs (total)::7,128
Genes (coding)::6,532
CDSs (with protein)::6,532
Genes (RNA)::117
rRNAs::7, 6, 9 (5S, 16S, 23S)
partial rRNAs::7, 6, 9 (5S, 16S, 23S)
tRNAs::88
ncRNAs::7
Pseudo Genes (total)::596
CDSs (without protein)::596
Pseudo Genes (ambiguous residues)::0 of 596
Pseudo Genes (frameshifted)::32 of 596
Pseudo Genes (incomplete)::551 of 596
Pseudo Genes (internal stop)::30 of 596
Pseudo Genes (multiple problems)::17 of 596
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,932,810
Total ungapped length4,932,810
Number of contigs3,105
Contig N503,033
Contig L50467
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,105

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,932,8103,1054,932,8103,03300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacaeEnterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025565.1Enterobacter cloacae subsp. cloacae ATCC 13047type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025565.1Enterobacter cloacaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9187.9477.48
Best-match type98.9187.9477.48

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna