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ASM428317v1

  • Anomalous assembly.
Organism name:
Legionella longbeachae (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NCTC11477
BioSample:
SAMN10599827
BioProject:
PRJNA510202
Submitter:
The Roslin Institute
Date:
2019/02/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • not used as type
GenBank assembly accession:
GCA_004283175.1 (latest)
RefSeq assembly accession:
GCF_004283175.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RXNW01
Assembly method:
SPAdes v. 3.13
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina

IDs: 2314281 [UID] 8626698 [GenBank] 8642128 [RefSeq]

See Genome Information for Legionella longbeachae

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from National Collection of Type Cultures (NCTC)
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/18/2018 02:38:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,620
CDSs (total)::3,567
Genes (coding)::3,445
CDSs (with protein)::3,445
Genes (RNA)::53
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::122
CDSs (without protein)::122
Pseudo Genes (ambiguous residues)::1 of 122
Pseudo Genes (frameshifted)::60 of 122
Pseudo Genes (incomplete)::64 of 122
Pseudo Genes (internal stop)::41 of 122
Pseudo Genes (multiple problems)::38 of 122
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,127,061
Total ungapped length4,126,561
Gaps between scaffolds0
Number of scaffolds38
Scaffold N50221,195
Scaffold L507
Number of contigs43
Contig N50206,066
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)38

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,127,061384,126,561221,19550
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