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ASM428317v1

Organism name:: Legionella longbeachae (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: NCTC11477
BioSample:: SAMN10599827
BioProject:: PRJNA510202
Submitter:: The Roslin Institute
Date:: 2019/02/20
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_004283175.1 (latest)
RefSeq assembly accession:: GCF_004283175.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: RXNW01
Assembly method:: SPAdes v. 3.13
Expected final version:: yes
Genome coverage:: 50.0x
Sequencing technology:: Illumina

IDs: 2314281 [UID] 8626698 [GenBank] 8642128 [RefSeq]

See Genome Information for Legionella longbeachae

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004283175.1	=	GCF_004283175.1	ASM428317v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from National Collection of Type Cultures (NCTC)
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/18/2018 02:38:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,620
CDSs (total)::3,567
Genes (coding)::3,445
CDSs (with protein)::3,445
Genes (RNA)::53
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::122
CDSs (without protein)::122
Pseudo Genes (ambiguous residues)::1 of 122
Pseudo Genes (frameshifted)::60 of 122
Pseudo Genes (incomplete)::64 of 122
Pseudo Genes (internal stop)::41 of 122
Pseudo Genes (multiple problems)::38 of 122
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,127,061
Total ungapped length	4,126,561
Gaps between scaffolds	0
Number of scaffolds	38
Scaffold N50	221,195
Scaffold L50	7
Number of contigs	43
Contig N50	206,066
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	38

	ANI	Query coverage	Subject coverage
Declared type	100.00	99.98	99.05
Best-match type	100.00	99.98	99.05

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ASM428317v1

See Genome Information for Legionella longbeachae

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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