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ASM416925v1

Organism name:
Legionella pneumophila (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NMB002475
BioSample:
SAMN10142072
BioProject:
PRJNA493786
Submitter:
University Hospital Basel
Date:
2019/02/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004169255.1 (latest)
RefSeq assembly accession:
GCF_004169255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RBHT01
Assembly method:
Unicycler v. 0.4.4
Expected final version:
yes
Genome coverage:
196x
Sequencing technology:
Illumina MiSeq

IDs: 2263021 [UID] 8483438 [GenBank] 8540158 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/01/2018 20:42:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,009
CDS (total)::2,960
Genes (coding)::2,911
CDS (coding)::2,911
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::1 (5S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::28 of 49
Pseudo Genes (incomplete)::21 of 49
Pseudo Genes (internal stop)::16 of 49
Pseudo Genes (multiple problems)::13 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,310,896
Total ungapped length3,310,896
Number of contigs45
Contig N50182,152
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,310,896453,310,896182,15200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophilaLegionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000008485.1Legionella pneumophila subsp. pneumophila str. Philadelphia 1type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000008485.1Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4696.8694.38
Best-match type99.4696.8694.38

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna