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ASM411606v1

Organism name:
Bacillus albus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: PG 1
BioSample:
SAMN10782923
BioProject:
PRJNA516150
Submitter:
University of Neuchatel
Date:
2019/01/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004116065.1 (latest)
RefSeq assembly accession:
GCF_004116065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SDFO01
Assembly method:
CLC NGS Cell v. 5.1.1
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina

IDs: 2221251 [UID] 8358728 [GenBank] 8382068 [RefSeq]

See Genome Information for Bacillus albus

There are 29 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/23/2019 19:03:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,140
CDSs (total)::5,999
Genes (coding)::5,702
CDSs (with protein)::5,702
Genes (RNA)::141
rRNAs::13, 17, 12 (5S, 16S, 23S)
complete rRNAs::12, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 16, 11 (5S, 16S, 23S)
tRNAs::94
ncRNAs::5
Pseudo Genes (total)::297
CDSs (without protein)::297
Pseudo Genes (ambiguous residues)::0 of 297
Pseudo Genes (frameshifted)::119 of 297
Pseudo Genes (incomplete)::150 of 297
Pseudo Genes (internal stop)::104 of 297
Pseudo Genes (multiple problems)::64 of 297
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,893,508
Total ungapped length5,893,508
Number of contigs43
Contig N50681,754
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)43

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,893,508435,893,508681,75400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus albusBacillus albus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001884185.1Bacillus albustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001884185.1Bacillus albustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9792.1193.49
Best-match type98.9792.1193.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna