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ASM411538v1

Organism name:
Malus domestica (apple)
Infraspecific name:
Cultivar: HFTH1
BioSample:
SAMN09744170
BioProject:
PRJNA482033
Submitter:
nextomics
Date:
2019/01/29
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_004115385.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
RDQH01
Assembly method:
FALCON v. 0.4
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio RSII

IDs: 2222381 [UID] 8359598 [GenBank]

See Genome Information for Malus domestica

There are 11 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length660,462,720
Total ungapped length658,899,306
Gaps between scaffolds0
Number of scaffolds343
Scaffold N5037,138,690
Scaffold L508
Number of contigs502
Contig N506,988,123
Contig L5032
Total number of chromosomes and plasmids17
Number of component sequences (WGS or clone)343

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_004115395.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM014049.1n/an/a0
Chromosome 2CM014050.1n/an/a0
Chromosome 3CM014051.1n/an/a0
Chromosome 4CM014052.1n/an/a0
Chromosome 5CM014053.1n/an/a0
Chromosome 6CM014054.1n/an/a0
Chromosome 7CM014055.1n/an/a0
Chromosome 8CM014056.1n/an/a0
Chromosome 9CM014057.1n/an/a0
Chromosome 10CM014058.1n/an/a0
Chromosome 11CM014059.1n/an/a0
Chromosome 12CM014060.1n/an/a0
Chromosome 13CM014061.1n/an/a0
Chromosome 14CM014062.1n/an/a0
Chromosome 15CM014063.1n/an/a0
Chromosome 16CM014064.1n/an/a0
Chromosome 17CM014065.1n/an/a0
unplacedn/an/an/a326

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All660,462,720343658,899,30637,138,6901590
Chromosome 132,944,118132,914,33632,944,118120
Chromosome 238,449,405138,440,50138,449,40580
Chromosome 337,138,690137,122,12537,138,69040
Chromosome 431,012,745130,991,40131,012,74570
Chromosome 547,891,858147,314,99747,891,858130
Chromosome 635,567,198135,566,77335,567,19850
Chromosome 735,934,761135,933,86235,934,76150
Chromosome 831,511,015131,406,57931,511,01570
Chromosome 934,800,404134,743,34634,800,40490
Chromosome 1043,815,736143,597,12443,815,736130
Chromosome 1142,456,296142,454,72242,456,296140
Chromosome 1232,285,079132,284,50432,285,07980
Chromosome 1344,866,511144,825,47644,866,511120
Chromosome 1431,515,206131,498,11031,515,20650
Chromosome 1556,644,392156,445,08156,644,392150
Chromosome 1641,670,059141,487,88141,670,059140
Chromosome 1733,998,825133,943,87633,998,82570
unplaced7,960,4223267,928,61230,16910
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