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AcoCah_v1_BIUU

Organism name:
Acomys cahirinus (Egyptian spiny mouse)
Isolate:
US019
Sex:
female
BioSample:
SAMN07678032
BioProject:
PRJNA399339
Submitter:
Broad Institute
Date:
2019/01/16
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004027535.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PVKX01
Assembly method:
DISCOVAR de novo v. discovardenovo-52488
Expected final version:
yes
Genome coverage:
32.7x
Sequencing technology:
Illumina HiSeq

IDs: 2211791 [UID] 8252158 [GenBank]

See Genome Information for Acomys cahirinus

History (Show revision history)

Comment

Global statistics

Total sequence length2,306,070,819
Total ungapped length2,304,023,919
Gaps between scaffolds0
Number of scaffolds371,342
Scaffold N5065,411
Scaffold L5010,134
Number of contigs391,811
Contig N5042,476
Contig L5015,859
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)371,342

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,306,070,819371,3422,304,023,91965,41120,4690
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