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XU_Tbim_1.0

Organism name:
Takifugu bimaculatus (bony fishes)
Isolate:
TB-2018
Sex:
female
BioSample:
SAMN10524747
BioProject:
PRJNA508537
Submitter:
College of Ocean and Earth Sciences, Xiamen University
Date:
2019/06/21
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004026145.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
SWLE01
Assembly method:
FALCON v. NOV-2017; LACHESIS v. NOV-2017
Expected final version:
yes
Genome coverage:
327.2x
Sequencing technology:
PacBio; Hi-C; Illumina HiSeq

IDs: 8062491 [UID] 22062128 [GenBank]

See Genome Information for Takifugu bimaculatus

Pathogen Detection Resources

History (Show revision history)

Comment

This genome was originally processed as a complete genome (GenBank accessions CP034975-CP034996) and has been replaced by this WGS genome.

Global statistics

Total sequence length404,311,738
Total ungapped length404,207,538
Gaps between scaffolds0
Number of scaffolds1,158
Scaffold N5016,785,490
Scaffold L5011
Number of contigs2,191
Contig N501,312,995
Contig L5083
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)1,158

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_004026155.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CP034975.1n/an/a0
Chromosome 2CP034986.1n/an/a0
Chromosome 3CP034990.1n/an/a0
Chromosome 4CP034991.1n/an/a0
Chromosome 5CP034992.1n/an/a0
Chromosome 6CP034993.1n/an/a0
Chromosome 7CP034994.1n/an/a0
Chromosome 8CP034995.1n/an/a0
Chromosome 9CP034996.1n/an/a0
Chromosome 10CP034976.1n/an/a0
Chromosome 11CP034977.1n/an/a0
Chromosome 12CP034978.1n/an/a0
Chromosome 13CP034979.1n/an/a0
Chromosome 14CP034980.1n/an/a0
Chromosome 15CP034981.1n/an/a0
Chromosome 16CP034982.1n/an/a0
Chromosome 17CP034983.1n/an/a0
Chromosome 18CP034984.1n/an/a0
Chromosome 19CP034985.2n/an/a0
Chromosome 20CP034987.1n/an/a0
Chromosome 21CP034988.1n/an/a0
Chromosome 22CP034989.1n/an/a0
unplacedn/an/an/a1,136

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All404,311,7381,158404,207,53816,785,4901,0330
Chromosome 128,865,866128,859,66628,865,866620
Chromosome 220,901,650120,896,65020,901,650500
Chromosome 320,839,560120,834,26020,839,560530
Chromosome 419,082,936119,077,63619,082,936530
Chromosome 518,556,983118,551,68318,556,983530
Chromosome 617,762,956117,758,55617,762,956440
Chromosome 717,385,507117,381,40717,385,507410
Chromosome 817,095,808117,091,10817,095,808470
Chromosome 917,068,765117,064,06517,068,765470
Chromosome 1016,786,025116,781,82516,786,025420
Chromosome 1116,785,490116,780,69016,785,490480
Chromosome 1216,284,555116,280,45516,284,555410
Chromosome 1316,217,719116,213,11916,217,719460
Chromosome 1416,120,980116,116,98016,120,980400
Chromosome 1516,059,269116,054,56916,059,269470
Chromosome 1615,683,578115,677,57815,683,578600
Chromosome 1714,840,516114,835,41614,840,516510
Chromosome 1814,847,795114,843,09514,847,795470
Chromosome 1913,896,868113,891,56813,896,868440
Chromosome 2013,487,414113,482,81413,487,414460
Chromosome 2112,729,218112,725,51812,729,218370
Chromosome 2210,376,233110,372,83310,376,233340
unplaced32,636,0471,13632,636,04745,25100