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SigHis_v1_BIUU

Organism name:
Sigmodon hispidus (hispid cotton rat)
Isolate:
US029
BioSample:
SAMN07678138
BioProject:
PRJNA399433
Submitter:
Broad Institute
Date:
2019/01/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004025045.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PVIH01
Assembly method:
DISCOVAR de novo v. discovardenovo-52488
Expected final version:
yes
Genome coverage:
43.2x
Sequencing technology:
Illumina HiSeq

IDs: 2210711 [UID] 8247738 [GenBank]

See Genome Information for Sigmodon hispidus

History (Show revision history)

Comment

Global statistics

Total sequence length2,730,600,022
Total ungapped length2,729,225,622
Gaps between scaffolds0
Number of scaffolds883,546
Scaffold N50101,373
Scaffold L507,354
Number of contigs897,290
Contig N5067,983
Contig L5011,141
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)883,546

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,730,600,022883,5462,729,225,622101,37313,7440
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