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TraJav_v1_BIUU

Organism name:
Tragulus javanicus (Java mouse-deer)
Isolate:
US108
Sex:
male
BioSample:
SAMN07678116
BioProject:
PRJNA399456
Submitter:
Broad Institute
Date:
2019/01/15
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_004024965.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PVHZ01
Assembly method:
DISCOVAR de novo v. discovardenovo-52488
Expected final version:
yes
Genome coverage:
43x
Sequencing technology:
Illumina HiSeq

IDs: 2210681 [UID] 8247658 [GenBank]

See Genome Information for Tragulus javanicus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,582,625,763
Total ungapped length2,582,342,863
Gaps between scaffolds0
Number of scaffolds1,156,990
Scaffold N5086,670
Scaffold L507,807
Number of contigs1,159,819
Contig N5078,495
Contig L508,783
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,156,990

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,582,625,7631,156,9902,582,342,86386,6702,8290
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