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ASM400382v1

Organism name:
Sinorhizobium meliloti (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USDA1195
BioSample:
SAMN07640779
BioProject:
PRJNA401434
Submitter:
University of Minneosta
Date:
2019/01/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004003825.1 (latest)
RefSeq assembly accession:
GCF_004003825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RPMP01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
11.3534353629352x
Sequencing technology:
Illumina Miseq

IDs: 2200141 [UID] 8205258 [GenBank] 8224788 [RefSeq]

See Genome Information for Sinorhizobium meliloti

There are 468 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/22/2018 03:23:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,917
CDSs (total)::6,858
Genes (coding)::6,393
CDSs (with protein)::6,393
Genes (RNA)::59
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::465
CDSs (without protein)::465
Pseudo Genes (ambiguous residues)::0 of 465
Pseudo Genes (frameshifted)::296 of 465
Pseudo Genes (incomplete)::234 of 465
Pseudo Genes (internal stop)::68 of 465
Pseudo Genes (multiple problems)::122 of 465
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,778,072
Total ungapped length6,778,072
Number of contigs110
Contig N50165,327
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)110

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,778,0721106,778,072165,32700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sinorhizobium melilotiSinorhizobium meliloti

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017876815.1Sinorhizobium melilotisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017876815.1Sinorhizobium melilotisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1592.5285.40
Best-match type99.1592.5285.40

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna