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ASM400180v1

Organism name:
Sinorhizobium meliloti (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USDA1734
BioSample:
SAMN07640900
BioProject:
PRJNA401434
Submitter:
University of Minneosta
Date:
2019/01/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004001805.1 (latest)
RefSeq assembly accession:
GCF_004001805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RPIG01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
10.8210677663628x
Sequencing technology:
Illumina Miseq

IDs: 2199121 [UID] 8203258 [GenBank] 8222728 [RefSeq]

See Genome Information for Sinorhizobium meliloti

There are 468 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/21/2018 11:04:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,996
CDSs (total)::6,937
Genes (coding)::6,363
CDSs (with protein)::6,363
Genes (RNA)::59
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::574
CDSs (without protein)::574
Pseudo Genes (ambiguous residues)::0 of 574
Pseudo Genes (frameshifted)::374 of 574
Pseudo Genes (incomplete)::298 of 574
Pseudo Genes (internal stop)::76 of 574
Pseudo Genes (multiple problems)::157 of 574
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,869,977
Total ungapped length6,869,977
Number of contigs163
Contig N50105,106
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)163

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,869,9771636,869,977105,10600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sinorhizobium melilotiSinorhizobium meliloti

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006539625.1Sinorhizobium melilotisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006539625.1Sinorhizobium melilotisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1879.9782.11
Best-match type98.1879.9782.11

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna