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ASM399200v1

Organism name:
Veillonella sp. VA139 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: VA139
BioSample:
SAMN10465603
BioProject:
PRJNA506647
Submitter:
Institut Pasteur
Date:
2019/01/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003992005.1 (latest)
RefSeq assembly accession:
GCF_003992005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RQVL01
Assembly method:
SPAdes v. 3.6
Expected final version:
yes
Genome coverage:
81.2x
Sequencing technology:
Illumina NextSeq

IDs: 2193871 [UID] 8187908 [GenBank] 8194188 [RefSeq]

See Genome Information for Veillonella sp. VA139

History (Show revision history)

Comment

Global statistics

Total sequence length2,172,276
Total ungapped length2,172,276
Number of contigs76
Contig N5067,981
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,172,276762,172,27667,98100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Veillonella sp. VA139Veillonella sp. VA139

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000260755.1Streptococcus infantissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.831.061.24

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena