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ASM398514v1

Organism name:
Rhizobium anhuiense (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CCBAU 23252
BioSample:
SAMN10370526
BioProject:
PRJNA503677
Submitter:
North West Agriculture and Forestry University
Date:
2018/12/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003985145.1 (latest)
RefSeq assembly accession:
GCF_003985145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RIBW01
Assembly method:
SOAPdenovo v. 2.04 OR SEP-2018
Expected final version:
no
Genome coverage:
134x
Sequencing technology:
Illumina NovaSeq

IDs: 2190451 [UID] 8168028 [GenBank] 8213388 [RefSeq]

See Genome Information for Rhizobium anhuiense

Pathogen Detection Resources

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Culture Collection of Beijing Agricultural University, Beijing, China.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/06/2018 15:23:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,900
CDS (total)::6,846
Genes (coding)::6,617
CDS (coding)::6,617
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::229
Pseudo Genes (ambiguous residues)::0 of 229
Pseudo Genes (frameshifted)::130 of 229
Pseudo Genes (incomplete)::139 of 229
Pseudo Genes (internal stop)::34 of 229
Pseudo Genes (multiple problems)::68 of 229
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,122,203
Total ungapped length7,122,173
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50321,130
Scaffold L506
Number of contigs47
Contig N50258,160
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)47

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,122,203447,122,173321,13030

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhizobium anhuienseRhizobium anhuiense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014638185.1Rhizobium anhuiensetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014638185.1Rhizobium anhuiensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8899.80
Best-match type99.9999.8899.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna