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ASM397456v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HCF238
BioSample:
SAMN10478547
BioProject:
PRJNA325248
Submitter:
International Pseudomonas aeruginosa Consortium
Date:
2018/12/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003974565.1 (latest)
RefSeq assembly accession:
GCF_003974565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RXAJ01
Assembly method:
A5 pipeline (Miseq, Linux) v. 20140521
Expected final version:
yes
Genome coverage:
37x
Sequencing technology:
Illumina MiSeq

IDs: 2185141 [UID] 8146058 [GenBank] 8175118 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30702 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA available from Roger C. Levesque
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/14/2018 00:35:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,153
CDSs (total)::6,084
Genes (coding)::6,016
CDSs (with protein)::6,016
Genes (RNA)::69
rRNAs::4, 2, 2 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::68
CDSs (without protein)::68
Pseudo Genes (ambiguous residues)::0 of 68
Pseudo Genes (frameshifted)::34 of 68
Pseudo Genes (incomplete)::31 of 68
Pseudo Genes (internal stop)::12 of 68
Pseudo Genes (multiple problems)::8 of 68
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,472,836
Total ungapped length6,472,836
Number of contigs25
Contig N50846,003
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,472,836256,472,836846,00300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5195.2695.70
Best-match type99.5195.2695.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna