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ASM396695v1

Organism name:
Parolsenella catena (actinobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 31932
BioSample:
SAMD00152193
BioProject:
PRJDB7698
Submitter:
National Institute of Genetics
Date:
2018/12/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003966955.1 (latest)
RefSeq assembly accession:
GCF_003966955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0; SPAdes v. 3.8.1
Genome coverage:
537X
Sequencing technology:
PacBio RSII; Illumina MiSeq

IDs: 2181761 [UID] 8125888 [GenBank] 8153538 [RefSeq]

See Genome Information for Parolsenella catena

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/21/2020 11:17:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,621
CDSs (total)::1,553
Genes (coding)::1,548
CDSs (with protein)::1,548
Genes (RNA)::68
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::0 of 5
Pseudo Genes (incomplete)::5 of 5
Pseudo Genes (internal stop)::0 of 5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,796,691
Total ungapped length1,796,691
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003966965.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP019367.1=NZ_AP019367.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,796,691

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parolsenella catenaParolsenella catena

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900143685.1Parolsenella massiliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2680.1071.70

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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