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ASM395598v1

  • Anomalous assembly.
Organism name:
Corynebacterium jeikeium (high G+C Gram-positive bacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: FDAARGOS_574
BioSample:
SAMN10163223
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2018/12/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • annotation fails completeness check
GenBank assembly accession:
GCA_003955985.1 (latest)
RefSeq assembly accession:
GCF_003955985.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.4
Genome coverage:
1982.0018712x
Sequencing technology:
PacBio; Illumina

IDs: 2173351 [UID] 8105468 [GenBank] 8135038 [RefSeq]

See Genome Information for Corynebacterium jeikeium

Pathogen Detection Resources

There are 26 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/14/2018 14:13:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,218
CDS (total)::2,150
Genes (coding)::2,114
CDS (coding)::2,114
Genes (RNA)::68
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::12 of 36
Pseudo Genes (incomplete)::25 of 36
Pseudo Genes (internal stop)::3 of 36
Pseudo Genes (multiple problems)::4 of 36
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,528,170
Total ungapped length2,528,170
Total number of chromosomes and plasmids3

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_003955995.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP033784.1=NZ_CP033784.1
Plasmid unnamed1CP033785.1=NZ_CP033785.1
Plasmid unnamed2CP033786.1=NZ_CP033786.1

Assembly statistics

MoleculeTotal
Length
All2,528,170
Chromosome 2,520,251
Plasmid unnamed15,990
Plasmid unnamed21,929

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium jeikeiumCorynebacterium jeikeium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900461185.1Corynebacterium jeikeiumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016889425.1Corynebacterium amycolatumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.414.344.34
Best-match type94.9890.7592.70

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna