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ASM394268v1

Organism name:
Streptococcus mitis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: BCA12
BioSample:
SAMN09631747
BioProject:
PRJNA480251
Submitter:
Clemson University
Date:
2018/12/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003942685.1 (latest)
RefSeq assembly accession:
GCF_003942685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RJNR01
Assembly method:
A5_miseq v. 20160825
Expected final version:
yes
Genome coverage:
39x
Sequencing technology:
Illumina MiSeq

IDs: 2166621 [UID] 8079628 [GenBank] 8088988 [RefSeq]

See Genome Information for Streptococcus mitis

There are 794 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,082,315
Total ungapped length2,082,315
Number of contigs58
Contig N50115,386
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,082,315582,082,315115,38600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus mitisStreptococcus mitis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000148585.3Streptococcus mitis NCTC 12261suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000148585.3Streptococcus mitissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.2571.8680.06
Best-match type94.2571.8680.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna