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ASM394080v1

Organism name:
Tabrizicola piscis (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: K13M18
BioSample:
SAMN10518959
BioProject:
PRJNA508289
Submitter:
Kyung Hee University
Date:
2018/12/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003940805.1 (latest)
RefSeq assembly accession:
GCF_003940805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS HGAP Assembly v. 3.0
Expected final version:
yes
Genome coverage:
188.0x
Sequencing technology:
PacBio RSII

IDs: 2165591 [UID] 8077498 [GenBank] 8086308 [RefSeq]

See Genome Information for Tabrizicola piscis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003940805.1-RS_2024_05_04
Annotation Date::05/04/2024 02:16:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,297
CDSs (total)::4,240
Genes (coding)::4,201
CDSs (with protein)::4,201
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::23 of 39
Pseudo Genes (incomplete)::18 of 39
Pseudo Genes (internal stop)::2 of 39
Pseudo Genes (multiple problems)::4 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,387,422
Total ungapped length4,387,422
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003940815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP034328.1=NZ_CP034328.1
Plasmid unnamed1CP034329.1=NZ_CP034329.1
Plasmid unnamed2CP034330.1=NZ_CP034330.1
Plasmid unnamed3CP034331.1=NZ_CP034331.1
Plasmid unnamed4CP034332.1=NZ_CP034332.1

Assembly statistics

MoleculeTotal
Length
All4,387,422
Chromosome 4,189,112
Plasmid unnamed1139,232
Plasmid unnamed229,404
Plasmid unnamed321,457
Plasmid unnamed48,217

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Tabrizicola piscisTabrizicola piscis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009908265.2Rhodobacter amnigenustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.2516.0216.97

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna