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ASM393904v1

Organism name:
Aliarcobacter skirrowii (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: A2S6
BioSample:
SAMN10518722
BioProject:
PRJNA508257
Submitter:
University of Nottingham
Date:
2018/12/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003939045.1 (latest)
RefSeq assembly accession:
GCF_003939045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Genomics Workbench v. 11.0.1
Expected final version:
yes
Genome coverage:
130.0x
Sequencing technology:
Illumina MiSeq

IDs: 2164711 [UID] 8075738 [GenBank] 8085488 [RefSeq]

See Genome Information for Aliarcobacter skirrowii

There are 40 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from IF Connerton

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003939045.1-RS_2024_04_07
Annotation Date::04/07/2024 14:23:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,971
CDSs (total)::1,914
Genes (coding)::1,908
CDSs (with protein)::1,908
Genes (RNA)::57
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::43
ncRNAs::2
Pseudo Genes (total)::6
CDSs (without protein)::6
Pseudo Genes (ambiguous residues)::0 of 6
Pseudo Genes (frameshifted)::2 of 6
Pseudo Genes (incomplete)::4 of 6
Pseudo Genes (internal stop)::0 of 6
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,877,752
Total ungapped length1,877,752
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003939055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP034309.1=NZ_CP034309.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,877,752

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aliarcobacter skirrowiiAliarcobacter skirrowii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003544835.1Aliarcobacter skirrowii CCUG 10374type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003544835.1Aliarcobacter skirrowiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7186.2382.20
Best-match type98.7186.2382.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna