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ASM393745v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KP_158
BioSample:
SAMN10249056
BioProject:
PRJNA497126
Submitter:
Washington University in St. Louis School of Medicine
Date:
2018/12/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003937455.1 (latest)
RefSeq assembly accession:
GCF_003937455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RHTU01
Assembly method:
SPAdes v. 3.11.0
Expected final version:
yes
Genome coverage:
65x
Sequencing technology:
Illumina NextSeq

IDs: 2163931 [UID] 8072358 [GenBank] 8086388 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 65327 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/09/2018 21:23:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,866
CDS (total)::5,777
Genes (coding)::5,607
CDS (coding)::5,607
Genes (RNA)::89
rRNAs::2, 3, 5 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::3, 5 (16S, 23S)
tRNAs::64
ncRNAs::15
Pseudo Genes (total)::170
Pseudo Genes (ambiguous residues)::1 of 170
Pseudo Genes (frameshifted)::73 of 170
Pseudo Genes (incomplete)::95 of 170
Pseudo Genes (internal stop)::37 of 170
Pseudo Genes (multiple problems)::31 of 170
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,806,330
Total ungapped length5,806,200
Gaps between scaffolds0
Number of scaffolds78
Scaffold N50255,622
Scaffold L508
Number of contigs82
Contig N50254,901
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)78

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,806,330785,806,200255,62240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2084.1785.35
Best-match type99.2084.1785.35

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna