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ASM393665v1

Organism name:
Pseudomonas sp. p99-361 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: p99
BioSample:
SAMN10249148
BioProject:
PRJNA497126
Submitter:
Washington University in St. Louis School of Medicine
Date:
2018/12/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003936655.1 (latest)
RefSeq assembly accession:
GCF_003936655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RHQS01
Assembly method:
SPAdes v. 3.11.0
Expected final version:
yes
Genome coverage:
15x
Sequencing technology:
Illumina NextSeq

IDs: 2163521 [UID] 8071518 [GenBank] 8106408 [RefSeq]

See Genome Information for Pseudomonas sp. p99-361

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/09/2018 17:34:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,412
CDS (total)::5,339
Genes (coding)::5,148
CDS (coding)::5,148
Genes (RNA)::73
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::191
Pseudo Genes (ambiguous residues)::0 of 191
Pseudo Genes (frameshifted)::52 of 191
Pseudo Genes (incomplete)::144 of 191
Pseudo Genes (internal stop)::29 of 191
Pseudo Genes (multiple problems)::29 of 191
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,598,483
Total ungapped length5,597,846
Gaps between scaffolds0
Number of scaffolds231
Scaffold N5055,848
Scaffold L5035
Number of contigs239
Contig N5053,752
Contig L5037
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)231

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,598,4832315,597,84655,84880

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas sp. p99-361Pseudomonas sp. p99-361

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009932375.1Pseudomonas juntenditype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4983.6981.75

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna