U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM385535v1

Organism name:
Neisseria gonorrhoeae (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FQ20
BioSample:
SAMN10396003
BioProject:
PRJNA504608
Submitter:
JCVI
Date:
2018/12/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003855355.1 (latest)
RefSeq assembly accession:
GCF_003855355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.7
Expected final version:
yes
Genome coverage:
694.0725934x
Sequencing technology:
Oxford Nanopore MiniION and Illumina

IDs: 2127301 [UID] 7976908 [GenBank] 7982278 [RefSeq]

See Genome Information for Neisseria gonorrhoeae

There are 17557 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/23/2023 03:19:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,363
CDSs (total)::2,293
Genes (coding)::2,060
CDSs (with protein)::2,060
Genes (RNA)::70
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::233
CDSs (without protein)::233
Pseudo Genes (ambiguous residues)::0 of 233
Pseudo Genes (frameshifted)::121 of 233
Pseudo Genes (incomplete)::127 of 233
Pseudo Genes (internal stop)::36 of 233
Pseudo Genes (multiple problems)::50 of 233
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,236,884
Total ungapped length2,236,884
Total number of chromosomes and plasmids2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003855365.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP034026.1=NZ_CP034026.1
Plasmid unnamedCP034027.1=NZ_CP034027.1

Assembly statistics

MoleculeTotal
Length
All2,236,884
Chromosome 2,232,677
Plasmid unnamed4,207

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Neisseria gonorrhoeaeNeisseria gonorrhoeae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003315235.1Neisseria gonorrhoeaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003315235.1Neisseria gonorrhoeaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5494.9999.18
Best-match type99.5494.9999.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna