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Zm-PE0075-REFERENCE-TUM-1.0

Organism name:
Zea mays (maize)
Infraspecific name:
Cultivar: PE0075
BioSample:
SAMN10081786
BioProject:
PRJNA360923
Submitter:
Technical University of Munich
Date:
2018/11/02
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003704525.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
RAQR01
Assembly method:
NRGene DeNovoMAGIC v. 3.0
Expected final version:
yes
Genome coverage:
217.0x
Sequencing technology:
Illumina

IDs: 2052051 [UID] 7685028 [GenBank]

See Genome Information for Zea mays

There are 109 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,198,504,211
Total ungapped length2,183,837,683
Gaps between scaffolds0
Number of scaffolds797
Scaffold N50229,083,644
Scaffold L505
Number of contigs43,379
Contig N50112,764
Contig L505,843
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)797

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003704545.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM010947.1n/an/a0
Chromosome 2CM010948.1n/an/a0
Chromosome 3CM010949.1n/an/a0
Chromosome 4CM010950.1n/an/a0
Chromosome 5CM010951.1n/an/a0
Chromosome 6CM010952.1n/an/a0
Chromosome 7CM010953.1n/an/a0
Chromosome 8CM010954.1n/an/a0
Chromosome 9CM010955.1n/an/a0
Chromosome 10CM010956.1n/an/a0
unplacedn/an/an/a751

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,197,932,1467612,183,310,917229,083,64442,4900
Chromosome 1304,354,3571302,604,149304,354,3575,7490
Chromosome 2245,977,1621244,535,855245,977,1624,6240
Chromosome 3243,152,0421241,732,924243,152,0424,5110
Chromosome 4259,095,5081257,625,508259,095,5084,7560
Chromosome 5229,083,6441227,660,089229,083,6444,4920
Chromosome 6171,518,6641170,338,563171,518,6643,5400
Chromosome 7180,246,0631179,140,144180,246,0633,3490
Chromosome 8185,911,6681184,776,962185,911,6683,5000
Chromosome 9166,466,3081165,435,253166,466,3083,2350
Chromosome 10154,864,7321153,881,293154,864,7322,9040
unplaced57,261,99875155,580,177654,9641,8300
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds572,0650572,06536036526,7660526,76616,835016,83592092000