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Thasp1

Organism name:
Thamnocephalis sphaerospora (zoopagomycotan fungi)
Infraspecific name:
Strain: RSA 1356
BioSample:
SAMN09741940
BioProject:
PRJNA421763
Submitter:
DOE Joint Genome Institute
Date:
2018/10/04
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Excluded from RefSeq:
  • derived from single cell
GenBank assembly accession:
GCA_003614735.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QUVU01
Assembly method:
SPAdes v. 3.6.0
Expected final version:
no
Single-cell amplification:
MDA
Genome coverage:
100x
Sequencing technology:
Illumina

IDs: 2007801 [UID] 7552398 [GenBank]

See Genome Information for Thamnocephalis sphaerospora

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Thasp1
JGI Project ID: 1090758
The DNA was provided by Gerald Benny(gbenny@ufl.edu)
The strain is available from Gerald Benny
Contacts: Timothy Y. James (tyjames@umich.edu)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of ... large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)

This submission is a co-assembly of 9 Illumina libraries: five single cell libraries and four 50 cell libraries. The amplification method for all 9 libraries was MDA.  more

Global statistics

Total sequence length18,203,817
Total ungapped length18,195,676
Gaps between scaffolds0
Number of scaffolds1,385
Scaffold N5023,189
Scaffold L50237
Number of contigs1,448
Contig N5022,678
Contig L50242
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,448

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced18,203,8171,38518,195,67623,189630