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ASM361205v1

Organism name:
Corallococcus llansteffanensis (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CA051B
BioSample:
SAMN10026045
BioProject:
PRJNA490141
Submitter:
Aberystwyth University
Date:
2018/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003612055.1 (latest)
RefSeq assembly accession:
GCF_003612055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RAWB01
Assembly method:
SPAdes v. 3.7
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 2005391 [UID] 7523518 [GenBank] 7552308 [RefSeq]

See Genome Information for Corallococcus llansteffanensis

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/28/2018 18:23:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,867
CDS (total)::8,809
Genes (coding)::8,539
CDS (coding)::8,539
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::270
Pseudo Genes (ambiguous residues)::0 of 270
Pseudo Genes (frameshifted)::50 of 270
Pseudo Genes (incomplete)::229 of 270
Pseudo Genes (internal stop)::19 of 270
Pseudo Genes (multiple problems)::27 of 270
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,526,383
Total ungapped length10,526,383
Number of contigs1,244
Contig N5015,085
Contig L50220
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,244

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,526,3831,24410,526,38315,08500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corallococcus llansteffanensisCorallococcus llansteffanensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003611735.1Corallococcus sicariustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.6878.7579.76

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected