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ASM361035v1

Organism name:
Sphingobacterium detergens (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CECT 7938
BioSample:
SAMN09074751
BioProject:
PRJNA463317
Submitter:
DOE Joint Genome Institute
Date:
2018/10/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003610355.1 (latest)
RefSeq assembly accession:
GCF_003610355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RAPY01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
no
Genome coverage:
106.0x
Sequencing technology:
Illumina HiSeq

IDs: 2004521 [UID] 7518078 [GenBank] 7535188 [RefSeq]

See Genome Information for Sphingobacterium detergens

History (Show revision history)

Comment

Global statistics

Total sequence length6,733,110
Total ungapped length6,732,474
Gaps between scaffolds0
Number of scaffolds12
Scaffold N50913,634
Scaffold L502
Number of contigs15
Contig N50912,889
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,733,110126,732,474913,63430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingobacterium detergensSphingobacterium detergens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003627955.1Sphingobacterium putealetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.4755.5355.64

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected