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ASM359103v1

Organism name:
Noviherbaspirillum saxi (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: K1R23-30
BioSample:
SAMN10055708
BioProject:
PRJNA490657
Submitter:
Chinese Academy of Sciences
Date:
2018/09/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003591035.1 (latest)
RefSeq assembly accession:
GCF_003591035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QYUO01
Assembly method:
HGAP v. Feb-2018
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
PacBio RSII

IDs: 1990791 [UID] 7492358 [GenBank] 7503358 [RefSeq]

See Genome Information for Noviherbaspirillum saxi

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2018 17:24:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,931
CDS (total)::5,853
Genes (coding)::5,720
CDS (coding)::5,720
Genes (RNA)::78
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::133
Pseudo Genes (ambiguous residues)::0 of 133
Pseudo Genes (frameshifted)::44 of 133
Pseudo Genes (incomplete)::91 of 133
Pseudo Genes (internal stop)::24 of 133
Pseudo Genes (multiple problems)::21 of 133
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,495,402
Total ungapped length6,495,402
Number of contigs3
Contig N503,349,627
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,495,40236,495,4023,349,62700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Noviherbaspirillum saxiNoviherbaspirillum saxi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015352985.1Noviherbaspirillum malthaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.3017.6413.95

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected