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ASM358644v1

Organism name:
Bacillus sp. Y1 (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
Y1
BioSample:
SAMN09404752
BioProject:
PRJNA475844
Submitter:
National Cheng Kung University
Date:
2018/09/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003586445.1 (latest)
RefSeq assembly accession:
GCF_003586445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. JUNE-2018
Expected final version:
yes
Genome coverage:
36.21x
Sequencing technology:
PacBio

IDs: 1987951 [UID] 7478128 [GenBank] 7496378 [RefSeq]

See Genome Information for Bacillus sp. Y1

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Prof. Jiin-Shuh Jean's Laboratory.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/21/2023 02:21:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,969
CDSs (total)::4,800
Genes (coding)::4,710
CDSs (with protein)::4,710
Genes (RNA)::169
rRNAs::14, 14, 14 (5S, 16S, 23S)
complete rRNAs::14, 14, 14 (5S, 16S, 23S)
tRNAs::121
ncRNAs::6
Pseudo Genes (total)::90
CDSs (without protein)::90
Pseudo Genes (ambiguous residues)::0 of 90
Pseudo Genes (frameshifted)::50 of 90
Pseudo Genes (incomplete)::44 of 90
Pseudo Genes (internal stop)::10 of 90
Pseudo Genes (multiple problems)::13 of 90
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,028,825
Total ungapped length5,028,825
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003586455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP030028.1=NZ_CP030028.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,028,825

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus sp. Y1Bacillus sp. Y1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900445365.1Cytobacillus firmussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.622.112.21

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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