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ASM358257v1

Organism name:
Mycobacteroides abscessus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: G142
BioSample:
SAMN09917533
BioProject:
PRJNA488058
Submitter:
Shanghai Pulmonary Hospital, Tongji University School of Medicine
Date:
2018/09/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003582575.1 (latest)
RefSeq assembly accession:
GCF_003582575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QXBO01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina HiSeq

IDs: 1985911 [UID] 7473008 [GenBank] 7487508 [RefSeq]

See Genome Information for Mycobacteroides abscessus

There are 2253 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/30/2018 14:44:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,899
CDS (total)::4,847
Genes (coding)::4,774
CDS (coding)::4,774
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::38 of 73
Pseudo Genes (incomplete)::34 of 73
Pseudo Genes (internal stop)::6 of 73
Pseudo Genes (multiple problems)::4 of 73
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,904,725
Total ungapped length4,904,725
Number of contigs38
Contig N50342,395
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)38

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,904,725384,904,725342,39500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacteroides abscessusMycobacteroides abscessus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000069185.1Mycobacteroides abscessus ATCC 19977type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000069185.1Mycobacteroides abscessustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3995.4191.93
Best-match type99.3995.4191.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna