Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM357401v1

Organism name:: Oscillibacter sp. PEA192 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: PEA192
BioSample:: SAMD00113757
BioProject:: PRJDB6815
Submitter:: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:: 2018/06/02
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003574015.1 (latest)
RefSeq assembly accession:: GCF_003574015.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Canu v. 1.4; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v. 20140604
Genome coverage:: 370x
Sequencing technology:: Sequel; NextSeq 500

IDs: 1981871 [UID] 7458068 [GenBank] 7467198 [RefSeq]

See Genome Information for Oscillibacter sp. PEA192

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003574015.1	=	GCF_003574015.1	ASM357401v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/23/2024 23:28:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,272
CDSs (total)::3,194
Genes (coding)::3,167
CDSs (with protein)::3,167
Genes (RNA)::78
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::65
ncRNAs::4
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::10 of 27
Pseudo Genes (incomplete)::23 of 27
Pseudo Genes (internal stop)::1 of 27
Pseudo Genes (multiple problems)::6 of 27
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,320,462
Total ungapped length	3,320,462
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	99.35	85.47	85.12

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM357401v1

See Genome Information for Oscillibacter sp. PEA192

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result