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ASM357072v1

Organism name:
Peribacillus asahii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MA001
BioSample:
SAMN09934868
BioProject:
PRJNA488490
Submitter:
Jet Propulsion Laboratory
Date:
2018/09/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003570725.1 (latest)
RefSeq assembly accession:
GCF_003570725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QWVS01
Assembly method:
CLC NGS Cell v. August-2018
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 1980011 [UID] 7448628 [GenBank] 7456468 [RefSeq]

See Genome Information for Peribacillus asahii

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Parag Vaishampayan.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/30/2018 09:31:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,199
CDS (total)::4,157
Genes (coding)::4,015
CDS (coding)::4,015
Genes (RNA)::42
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::31
ncRNAs::7
Pseudo Genes (total)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::63 of 142
Pseudo Genes (incomplete)::77 of 142
Pseudo Genes (internal stop)::43 of 142
Pseudo Genes (multiple problems)::35 of 142
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,341,281
Total ungapped length4,341,281
Number of contigs85
Contig N50118,128
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,341,281854,341,281118,12800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Peribacillus asahiiPeribacillus asahii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024169475.1Peribacillus frigoritoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.013.762.97

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected