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ASM353348v1

Organism name:
Oscillospiraceae bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
UBA8186
BioSample:
SAMN08020444
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_003533485.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DQGJ01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
7.30x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1957741 [UID] 7389748 [GenBank]

See Genome Information for Oscillospiraceae bacterium

There are 3985 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/11/2018 00:13:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,886
CDS (total)::1,871
Genes (coding)::1,853
CDS (coding)::1,853
Genes (RNA)::15
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::10
ncRNAs::4
Pseudo Genes (total)::18
Pseudo Genes (ambiguous residues)::1 of 18
Pseudo Genes (frameshifted)::3 of 18
Pseudo Genes (incomplete)::14 of 18
Pseudo Genes (internal stop)::1 of 18
Pseudo Genes (multiple problems)::1 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,613,482
Total ungapped length1,530,977
Gaps between scaffolds0
Number of scaffolds218
Scaffold N508,878
Scaffold L5058
Number of contigs672
Contig N504,729
Contig L50106
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)218

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,613,4822181,530,9778,8784540

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oscillospiraceae bacteriumOscillospiraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002904165.1Herbinix hemicellulosilyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.670.120.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena