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Source database (GenBank or RefSeq) File type

ASM353166v1

Organism name:

Candidatus Collierbacteria bacterium (bacteria)

Taxonomy check:

Inconclusive

Isolate:

UBA12020

BioSample:

SAMN08020411

BioProject:

PRJNA417962

Submitter:

University of Queensland

Date:

2018/09/10

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_003531665.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DQFC01

Assembly method:

CLC de novo assembler v. 4.4.1

Expected final version:

yes

Genome coverage:

135.52x

Sequencing technology:

Illumina HiSeq 2000

IDs: 1957171 [UID] 7387648 [GenBank]

See Genome Information for Candidatus Collierbacteria bacterium

Pathogen Detection Resources

There are 37 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003531665.1	n/a	n/a	ASM353166v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/10/2018 23:00:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,151
CDS (total)::1,110
Genes (coding)::1,096
CDS (coding)::1,096
Genes (RNA)::41
rRNAs::1, 1 (5S, 16S)
complete rRNAs::1, 1 (5S, 16S)
tRNAs::38
ncRNAs::1
Pseudo Genes (total)::14
Pseudo Genes (ambiguous residues)::1 of 14
Pseudo Genes (frameshifted)::2 of 14
Pseudo Genes (incomplete)::11 of 14
Pseudo Genes (internal stop)::0 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,000,587
Total ungapped length	1,000,093
Gaps between scaffolds	0
Number of scaffolds	44
Scaffold N50	37,963
Scaffold L50	7
Number of contigs	52
Contig N50	37,963
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	44

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	na	0.00	0.00

Assembly

Genome Assembly

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Download Assembly

ASM353166v1

See Genome Information for Candidatus Collierbacteria bacterium

Pathogen Detection Resources

There are 37 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result