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ASM352723v1

Organism name:
Nitrospiraceae bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA10041
BioSample:
SAMN08020215
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_003527235.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DPXO01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
4.79x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1954741 [UID] 7381938 [GenBank]

See Genome Information for Nitrospiraceae bacterium

There are 221 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2018 23:35:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,792
CDS (total)::1,785
Genes (coding)::1,655
CDS (coding)::1,655
Genes (RNA)::7
tRNAs::6
ncRNAs::1
Pseudo Genes (total)::130
Pseudo Genes (ambiguous residues)::6 of 130
Pseudo Genes (frameshifted)::111 of 130
Pseudo Genes (incomplete)::14 of 130
Pseudo Genes (internal stop)::6 of 130
Pseudo Genes (multiple problems)::7 of 130
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,422,120
Total ungapped length1,421,409
Gaps between scaffolds0
Number of scaffolds304
Scaffold N505,017
Scaffold L50102
Number of contigs324
Contig N504,854
Contig L50104
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)304

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,422,1203041,421,4095,017200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospiraceae bacteriumNitrospiraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014701235.1Dissulfurispira thermophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.160.060.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena