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Source database (GenBank or RefSeq) File type

ASM352341v1

Organism name:

Acinetobacter johnsonii (g-proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

UBA11272

BioSample:

SAMN08020280

BioProject:

PRJNA417962

Submitter:

University of Queensland

Date:

2018/09/10

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome

GenBank assembly accession:

GCA_003523415.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DQAB01

Assembly method:

CLC de novo assembler v. 4.4.1

Expected final version:

yes

Genome coverage:

11.29x

Sequencing technology:

Illumina HiSeq 2000

IDs: 1952041 [UID] 7376548 [GenBank]

See Genome Information for Acinetobacter johnsonii

Pathogen Detection Resources

There are 135 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003523415.1	n/a	n/a	ASM352341v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/10/2018 18:18:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,218
CDS (total)::3,175
Genes (coding)::2,950
CDS (coding)::2,950
Genes (RNA)::43
rRNAs::2 (5S)
complete rRNAs::2 (5S)
tRNAs::37
ncRNAs::4
Pseudo Genes (total)::225
Pseudo Genes (ambiguous residues)::16 of 225
Pseudo Genes (frameshifted)::164 of 225
Pseudo Genes (incomplete)::48 of 225
Pseudo Genes (internal stop)::43 of 225
Pseudo Genes (multiple problems)::42 of 225
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,280,529
Total ungapped length	3,278,431
Gaps between scaffolds	0
Number of scaffolds	128
Scaffold N50	40,545
Scaffold L50	21
Number of contigs	179
Contig N50	33,478
Contig L50	27
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	128

	ANI	Query coverage	Subject coverage
Declared type	95.86	86.75	79.39
Best-match type	95.86	86.75	79.39

Assembly

Genome Assembly

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ASM352341v1

See Genome Information for Acinetobacter johnsonii

Pathogen Detection Resources

There are 135 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result