U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM351280v1

Organism name:
Erwinia sp. (enterobacteria)
Taxonomy check:
OK
Isolate:
UBA8792
BioSample:
SAMN08019303
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_003512805.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DOOK01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
7.32x
Sequencing technology:
Illumina HiSeq 2500

IDs: 1945431 [UID] 7342708 [GenBank]

See Genome Information for Erwinia sp.

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/01/2018 07:07:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,066
CDS (total)::3,027
Genes (coding)::2,922
CDS (coding)::2,922
Genes (RNA)::39
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::105
Pseudo Genes (ambiguous residues)::37 of 105
Pseudo Genes (frameshifted)::43 of 105
Pseudo Genes (incomplete)::40 of 105
Pseudo Genes (internal stop)::21 of 105
Pseudo Genes (multiple problems)::31 of 105
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,878,514
Total ungapped length2,848,389
Gaps between scaffolds0
Number of scaffolds473
Scaffold N506,964
Scaffold L50136
Number of contigs695
Contig N505,376
Contig L50171
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)473

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,878,5144732,848,3896,9642220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erwinia sp.Erwinia sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019132875.1Erwinia phyllosphaeraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.8952.6531.69

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna