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ASM350431v1

Organism name:
Clostridiales bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
UBA12441
BioSample:
SAMN08018942
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003504315.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DOAL01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
74.12x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1941441 [UID] 7334178 [GenBank]

See Genome Information for Clostridiales bacterium

There are 2256 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/28/2018 06:36:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,328
CDS (total)::2,304
Genes (coding)::2,235
CDS (coding)::2,235
Genes (RNA)::24
tRNAs::21
ncRNAs::3
Pseudo Genes (total)::69
Pseudo Genes (ambiguous residues)::0 of 69
Pseudo Genes (frameshifted)::45 of 69
Pseudo Genes (incomplete)::19 of 69
Pseudo Genes (internal stop)::22 of 69
Pseudo Genes (multiple problems)::17 of 69
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,380,421
Total ungapped length2,380,421
Number of contigs45
Contig N5097,255
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,380,421452,380,42197,25500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridiales bacteriumClostridiales bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana