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ASM348656v1

Organism name:
Oscillospiraceae bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
UBA12286
BioSample:
SAMN08018420
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_003486565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DNGV01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
6.58x
Sequencing technology:
Illumina HiSeq 2500

IDs: 1933651 [UID] 7316418 [GenBank]

See Genome Information for Oscillospiraceae bacterium

There are 3985 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/19/2018 16:50:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,387
CDS (total)::1,375
Genes (coding)::1,252
CDS (coding)::1,252
Genes (RNA)::12
rRNAs::2 (5S)
complete rRNAs::1 (5S)
partial rRNAs::1 (5S)
tRNAs::9
ncRNAs::1
Pseudo Genes (total)::123
Pseudo Genes (ambiguous residues)::110 of 123
Pseudo Genes (frameshifted)::48 of 123
Pseudo Genes (incomplete)::10 of 123
Pseudo Genes (internal stop)::3 of 123
Pseudo Genes (multiple problems)::47 of 123
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,296,239
Total ungapped length1,283,309
Gaps between scaffolds0
Number of scaffolds224
Scaffold N506,586
Scaffold L5062
Number of contigs480
Contig N504,122
Contig L5097
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)224

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,296,2392241,283,3096,5862560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oscillospiraceae bacteriumOscillospiraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018065375.1Candidatus Equinaster intestinalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type77.870.220.19

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena