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ASM347186v1

Organism name:
Enterobacter cloacae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM16-28
BioSample:
SAMN09734831
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003471865.1 (latest)
RefSeq assembly accession:
GCF_003471865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRKH01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926311 [UID] 7301748 [GenBank] 7356478 [RefSeq]

See Genome Information for Enterobacter cloacae

There are 1008 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 16:11:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,036
CDS (total)::4,943
Genes (coding)::4,829
CDS (coding)::4,829
Genes (RNA)::93
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::79
ncRNAs::7
Pseudo Genes (total)::114
Pseudo Genes (ambiguous residues)::0 of 114
Pseudo Genes (frameshifted)::58 of 114
Pseudo Genes (incomplete)::40 of 114
Pseudo Genes (internal stop)::51 of 114
Pseudo Genes (multiple problems)::34 of 114
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,135,641
Total ungapped length5,135,493
Gaps between scaffolds0
Number of scaffolds23
Scaffold N50726,894
Scaffold L503
Number of contigs32
Contig N50454,622
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,135,641235,135,493726,89490

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacaeEnterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009660455.1Enterobacter cloacae subsp. dissolvenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009660455.1Enterobacter cloacaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9489.8095.22
Best-match type98.9489.8095.22

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna