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ASM346622v1

Organism name:
Ruminococcus bromii (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: TM09-18AC
BioSample:
SAMN09737017
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003466225.1 (latest)
RefSeq assembly accession:
GCF_003466225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSOJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923491 [UID] 7296018 [GenBank] 7350058 [RefSeq]

See Genome Information for Ruminococcus bromii

There are 61 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 09:47:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,183
CDS (total)::2,127
Genes (coding)::2,089
CDS (coding)::2,089
Genes (RNA)::56
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::38
Pseudo Genes (ambiguous residues)::1 of 38
Pseudo Genes (frameshifted)::8 of 38
Pseudo Genes (incomplete)::25 of 38
Pseudo Genes (internal stop)::8 of 38
Pseudo Genes (multiple problems)::4 of 38
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,267,981
Total ungapped length2,267,901
Gaps between scaffolds0
Number of scaffolds9
Scaffold N50375,652
Scaffold L502
Number of contigs17
Contig N50375,207
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,267,98192,267,901375,65280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus bromiiRuminococcus bromii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.5774.6578.69
Best-match type94.5774.6578.69

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
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