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ASM346354v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OF01-1
BioSample:
SAMN09736661
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003463545.1 (latest)
RefSeq assembly accession:
GCF_003463545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSDG01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922151 [UID] 7293338 [GenBank] 7665368 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1152 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:00:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,626
CDS (total)::4,557
Genes (coding)::4,356
CDS (coding)::4,356
Genes (RNA)::69
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::64
ncRNAs::2
Pseudo Genes (total)::201
Pseudo Genes (ambiguous residues)::4 of 201
Pseudo Genes (frameshifted)::106 of 201
Pseudo Genes (incomplete)::82 of 201
Pseudo Genes (internal stop)::70 of 201
Pseudo Genes (multiple problems)::56 of 201
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,223,488
Total ungapped length5,223,278
Gaps between scaffolds0
Number of scaffolds60
Scaffold N50198,902
Scaffold L509
Number of contigs81
Contig N50163,345
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)60

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,223,488605,223,278198,902210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020687555.1Bacteroides hominis (ex Afrizal et al. 2022)suspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.3371.9071.65
Best-match type98.3781.4882.12

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is suspected of being inaccurate