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ASM345453v1

Organism name:
Cyanobacteria bacterium UBA8543 (cyanobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA8543
BioSample:
SAMN08017818
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_003454535.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DMJW01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
7.45x
Sequencing technology:
Illumina HiSeq 2500

IDs: 1917671 [UID] 7281168 [GenBank]

See Genome Information for Cyanobacteria bacterium UBA8543

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2018 13:33:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,345
CDS (total)::8,302
Genes (coding)::7,126
CDS (coding)::7,126
Genes (RNA)::43
rRNAs::2 (16S)
partial rRNAs::2 (16S)
tRNAs::38
ncRNAs::3
Pseudo Genes (total)::1,176
Pseudo Genes (ambiguous residues)::824 of 1,176
Pseudo Genes (frameshifted)::494 of 1,176
Pseudo Genes (incomplete)::266 of 1,176
Pseudo Genes (internal stop)::59 of 1,176
Pseudo Genes (multiple problems)::446 of 1,176
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,778,461
Total ungapped length8,448,664
Gaps between scaffolds0
Number of scaffolds672
Scaffold N5018,449
Scaffold L50152
Number of contigs4,227
Contig N504,088
Contig L50613
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)672

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,778,4616728,448,66418,4493,5550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cyanobacteria bacterium UBA8543Cyanobacteria bacterium UBA8543

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000317475.1Oscillatoria nigro-viridistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.920.670.68

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena