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ASM345421v1

Organism name:
Sphingobacterium sp. (CFB group bacteria)
Taxonomy check:
OK
Isolate:
UBA10318
BioSample:
SAMN08017839
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_003454215.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DMKQ01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
6.69x
Sequencing technology:
Illumina HiSeq 2500

IDs: 1917511 [UID] 7280828 [GenBank]

See Genome Information for Sphingobacterium sp.

There are 69 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2018 11:17:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,351
CDS (total)::4,321
Genes (coding)::4,159
CDS (coding)::4,159
Genes (RNA)::30
tRNAs::28
ncRNAs::2
Pseudo Genes (total)::162
Pseudo Genes (ambiguous residues)::43 of 162
Pseudo Genes (frameshifted)::73 of 162
Pseudo Genes (incomplete)::39 of 162
Pseudo Genes (internal stop)::49 of 162
Pseudo Genes (multiple problems)::39 of 162
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,380,530
Total ungapped length4,337,531
Gaps between scaffolds0
Number of scaffolds748
Scaffold N506,616
Scaffold L50218
Number of contigs1,084
Contig N505,161
Contig L50274
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)748

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,380,5307484,337,5316,6163360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingobacterium sp.Sphingobacterium sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016894225.1Sphingobacterium multivorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8587.2063.40

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna