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ASM345335v1

Organism name:
Parabacteroides distasonis (CFB group bacteria)
Taxonomy check:
OK
Isolate:
UBA10682
BioSample:
SAMN08017862
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genome length too small
GenBank assembly accession:
GCA_003453355.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DMLN01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
15.86x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1917071 [UID] 7279958 [GenBank]

See Genome Information for Parabacteroides distasonis

Pathogen Detection Resources

There are 1007 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2018 13:02:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,387
CDS (total)::3,359
Genes (coding)::3,267
CDS (coding)::3,267
Genes (RNA)::28
tRNAs::26
ncRNAs::2
Pseudo Genes (total)::92
Pseudo Genes (ambiguous residues)::0 of 92
Pseudo Genes (frameshifted)::50 of 92
Pseudo Genes (incomplete)::40 of 92
Pseudo Genes (internal stop)::15 of 92
Pseudo Genes (multiple problems)::10 of 92
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,020,600
Total ungapped length3,966,597
Gaps between scaffolds0
Number of scaffolds120
Scaffold N5050,357
Scaffold L5026
Number of contigs353
Contig N5027,813
Contig L5047
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)120

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,020,6001203,966,59750,3572330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides distasonisParabacteroides distasonis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012845.1Parabacteroides distasonis ATCC 8503suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012845.1Parabacteroides distasonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4488.2972.79
Best-match type98.4488.2972.79

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna