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Source database (GenBank or RefSeq) File type

ASM345255v1

Organism name:

Porphyromonadaceae bacterium (CFB group bacteria)

Taxonomy check:

Inconclusive

Isolate:

UBA10792

BioSample:

SAMN08017923

BioProject:

PRJNA417962

Submitter:

University of Queensland

Date:

2018/09/05

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_003452555.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DMNW01

Assembly method:

CLC de novo assembler v. 4.4.1

Expected final version:

yes

Genome coverage:

15.36x

Sequencing technology:

Illumina HiSeq 2000

IDs: 1916691 [UID] 7279188 [GenBank]

See Genome Information for Porphyromonadaceae bacterium

Pathogen Detection Resources

There are 86 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003452555.1	n/a	n/a	ASM345255v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/18/2018 17:16:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,501
CDS (total)::1,468
Genes (coding)::1,426
CDS (coding)::1,426
Genes (RNA)::33
tRNAs::30
ncRNAs::3
Pseudo Genes (total)::42
Pseudo Genes (ambiguous residues)::11 of 42
Pseudo Genes (frameshifted)::25 of 42
Pseudo Genes (incomplete)::17 of 42
Pseudo Genes (internal stop)::2 of 42
Pseudo Genes (multiple problems)::13 of 42
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,771,507
Total ungapped length	1,769,597
Gaps between scaffolds	0
Number of scaffolds	39
Scaffold N50	76,791
Scaffold L50	9
Number of contigs	68
Contig N50	45,298
Contig L50	13
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	39

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	91.33	0.03	0.01

Assembly

Genome Assembly

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Download Assembly

ASM345255v1

See Genome Information for Porphyromonadaceae bacterium

Pathogen Detection Resources

There are 86 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result